Application of LAMP as a point-of-care diagnostic assay in remote and low-income regions: mini-review
DOI:
https://doi.org/10.2478/AMB-2024-0020Keywords:
LAMP, point-of-care, diagnosticsAbstract
Loop-mediated isothermal amplification (LAMP) has received increased attention as a sensitive and fast molecular technique that could be applied at the site of need. The LAMP has been shown to specifically detect a variety of bacterial and viral infections as a promising point-of-care (POC) test. LAMP has recently demonstrated sensitivity and specificity comparable to or nearly equal to polymerase chain reaction in SARS-CoV-2 detection. The main advantages of LAMP are its application in low-income or remote areas
where there are no specialized laboratories or molecular specialists. In the following minireview we discuss the potential of LAMP as a POC molecular diagnostic method. Moreover, we summarized its validated application and future challenges.
References
Zhou Y, Wan Z, Yang S, et al. A mismatch-tolerant reverse transcription loop-mediated isothermal amplification method and its application on simultaneous detection of all four serotype of dengue viruses. Front Microbiol, 2019, 10:1056.
Phillips EA, Moehling TJ, Bhadra S, et al. Strand displacement probes combined with isothermal nucleic acid amplification for
instrument-free detection from complex samples. Anal Chem, 2018, 90(11):6580-6586.
Barnes L, Heithoff DM, Mahan SP, et al. Smartphone-based pathogen diagnosis in urinary sepsis patients. EBioMedicine, 2018, 36:73-82.
Wong YP, Othman S, Lau YL, et al. Loop-mediated isothermal amplification (LAMP): a versatile technique for detection of micro-organisms. J Appl Microbiol, 2018, 124(3):626-643.
Tanner NA, Zhang YH, Evans TC. Visual detection of isothermal nucleic acid amplification using pH-sensitive dyes. Bio-techniques, 2015, 58(2):59-68.
Quyen TL, Ngo TA, Bang DD, et al. Classification of Multiple DNA dyes based on inhibition effects on real-time loop-mediated isothermal amplification (LAMP): prospect for point of care setting. Front Microbiol, 2019, 10:2234.
Panno S, Matić S, Tiberini A, et al. Loop mediated isothermal amplification: principles and applications in plant virology. Plants, 2020, 9(4):461.
Qian W, Meng Y, Lu Y, et al. Rapid, sensitive, and carryover contamination-free loop-mediated isothermal amplification-coupled visual detection method for ‘Candidatus Liberibacter asiaticus’. J Agric Food Chem, 2017, 65(38):8302-8310.
Poon LL, Wong BW, Ma EH, et al. Sensitive and inexpensive molecular test for falciparum malaria: detecting Plasmodium
falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin Chem, 2006, 52(2):3
Curtis KA, Rudolph DL, Owen SM. Rapid detection of HIV-1 by everse-transcription, loop-mediated isothermal amplification (RT-LAMP). J Virol Methods, 2008, 151(2):264-270.
Priye A, Bird SW, Light YK, et al. A smartphone-based diagnostic platform for rapid detection of Zika, chikungunya, and dengue viruses. Sci Rep, 2017, 7:44778.
Gärtner K, Meleke H, Kamdolozi M, et al. A fast extraction-free isothermal LAMP assay for detection of SARS-CoV-2 with potential use in resource-limited settings. Virol J, 2022, 19:77.
Nguyen HV, Nguyen VD, Liu F, et al. An integrated smartphone-based genetic analyzer for qualitative and quantitative pathogen detection. ACS Omega, 2020, 5(35):22208-22214.
Curtis KA, Rudolph DL, Sequence-Specific Detection OM. Method for reverse transcription, loop-mediated isothermal amplification of HIV-1. J Med Virol, 2009, 81(6):966-972.
Rudolph DL, Sullivan V, Owen SM, et al. Detection of acute HIV-1 infection by RT-LAMP. Martzyschistosomiasis Plos One, 2015, 10(5):e0126609.
Ball CS, Light YK, Koh CY, et al. Quenching of unincorporated amplification signal reporters in reverse-transcription loop-mediated isothermal amplification enabling bright, single-step, closed-tube, and multiplexed detection of RNA viruses. Anal Chem, 2016, 88(7):3562-3568.
Priye A, Ball CS, Meagher RJ. Colorimetric-luminance readout for quantitative analysis of fluorescence signals with a smartphone CMOS sensor. Anal Chem, 2018, 90(21):12385-12389.
Damhorst GL, Duarte-Guevara C, Chen W, et al. Smartphoneimaged HIV-1 reverse-transcription loop-mediated isothermal
amplification (RT-LAMP) on a chip from whole blood. Engineering, 2015, 1(3):324-335.
Liao S-C, Peng J, Mauk MG, et al. Smart cup: A minimallyinstrumented, smartphone-based point-of-care molecular diagnostic device. Sens Actuators B Chem, 2016, 229:232-238.
Ganguli A, Ornob A, Yu H, et al. Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya, and Dengue at point-of-care. Biomed Microdevices, 2017, 19(4):73.
Vergara A, Boutal H, Ceccato A, et al. Assessment of a LoopMediated Isothermal Amplification (LAMP) Assay for the Rapid Detection of Pathogenic Bacteria from Respiratory Samples in Patients with Hospital-Acquired Pneumonia. Microorganisms, 2020, 8(1):11.
Ramezani R, Kardoost Parizi Z, Ghorbanmehr N, Mirshafiee H. Rapid and Simple Detection of Escherichia coli by Loop-Mediated Isothermal Amplification Assay in Urine Specimens. Avicenna J Med Biotechnol, 2018, 10(4):269-272.
Martzy R, Kolm C, Brunner K, et al. A loop-mediated isothermal amplification (LAMP) assay for the rapid detection of Enterococcus spp. in water. Water Res, 2017, 122:62-69.
Romero MR, Cook N. A Rapid LAMP-Based Method for Screening Poultry Samples for Campylobacter Without Enrichment. Front Microbiol, 2018, 9:2401.
Gandasegui J, Fernández-Soto P, Dacal E, et al. Field and laboratory comparative evaluation of a LAMP assay for the diagnosis of urogenital schistosomiasis in Cubal, Central Angola. Trop Med Int Health, 2018, 23(9):992-1001.
Cook J, Aydin-Schmidt B, González IJ, et al. Loop-mediated isothermal amplification (LAMP) for point-of-care detection of
asymptomatic low-density malaria parasite carriers in Zanzibar. Malar J, 2015, 14(1):43.
Adams ER, Schoone G, Versteeg I, et al. Development and evaluation of a novel loop-mediated isothermal amplification assay for diagnosis of cutaneous and visceral leishmaniasis. J Clin Microbiol, 2018, 56(7):e00386-18.
Eshghifar N, Busheri A, Shrestha R, et al. Evaluation of analytical performance of seven rapid antigen detection kits for detection of SARS-CoV-2 virus. Int J Gen Med, 2021, 14:435-440.
Poon LL, Leung CS, Chan KH, et al. Detection of human influenza A viruses by loop-mediated isothermal amplification. J Clin Microbiol, 2005, 43(1):427-30.
Yuan XY, Wang YL, Meng K, et al. LAMP real-time turbidity detection for fowl adenovirus. BMC Vet. Res, 2019, 15(1):256.
Kalvatchev Z, Tsekov I, Kalvatchev N. Loop-Mediated Amplification for Sensitive and Specific Detection of Viruses, Biotech and Biotech Equip, 2010, 24:1
FDA, Emergency Use Authorization for MobileDetect Bio BCC19 (MD-Bio BCC19) Test Kit (2020), accessed January 6, 2023, https://www.fda.gov/media/141788/download
FDA. Emergency Use Authorization for AQ-TOP COVID-19 Rapid Detection Kit (2020), accessed January 6, 2023, https://www.fda.gov/media/138300/download.
FDA. Emergency Use Authorization for Color SARS-CoV-2 RT-LAMP Diagnostic Assay(2020), accessed January 6, 2023,
https://www.fda.gov/media/138249/download.
Mori Y, Kanda H, Notomi T. Loop-mediated isothermal amplification (LAMP): recent progress in research and development.
J Infect Chemother, 2013, 19:404-411.
Moore KJM, Cahill J, Aidelberg G, et al. gLAMP Consortium.
Loop-Mediated Isothermal Amplification Detection of SARSCoV-2 and Myriad Other Applications. J Biomol Tech, 2021,
(3):228-275.
Özay B, McCalla S. A review of reaction enhancement strategies for isothermal nucleic acid amplification reactions, Sensors and Actuators Reports, 2021, 3:100033.
Zhang Y, Ren G, Buss J, et al. Enhancing colorimetric loop-mediated isothermal amplification speed and sensitivity with guanidine chloride. Biotechniques, 2020, 69(3):178-185.
Quyen TL, Ngo TA, Bang DD, et al. Classification of Multiple DNA dyes based on inhibition effects on real-time loop-mediated isothermal amplification (LAMP): prospect for point of care setting. Front Microbiol, 2019, 10:2234.
Tone K, Fujisaki R, Yamazaki T, et al. Enhancing melting curve analysis for the discrimination of loop-mediated isothermal amplification products from four pathogenic molds: use of inorganic pyrophosphatase and its effect in reducing the variance in melting temperature values. J Microbiol Methods, 2017, 132:41-45.
Mabey D, Peeling RW, Ustianowski A, Perkins MD. Diagnostics for the developing world. Nat. Rev. Microbiol, 2004, 2:231-240.
Ganguli A, Ornob A, Yu H, et al. Hands-free smartphone-based diagnostics for simultaneous detection of Zika, Chikungunya,
and Dengue at point-of-care. Biomed Microdevices, 2017, 19(4):73.
Liao SC, Peng J, Mauk MG, et al. Smart Cup: A MinimallyInstrumented, Smartphone-Based Point-of-Care Molecular Diagnostic Device. Sens Actuators B Chem, 2016, 229:232-238.
Curtis KA, Rudolph DL, Nejad I, et al. Isothermal amplification using a chemical heating device for point-of-care detection of HIV-1. PLoS ONE, 2012, 7:e31432.
Nkouawa A, Sako Y, Li T, et al. A loop-mediated isothermal amplification method for a differential identification of Taenia tapeworms from human: application to a field survey. Parasitol Int, 2012, 61:723-5.
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